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HPC
singularity
Commits
82d7eae0
Commit
82d7eae0
authored
May 19, 2020
by
David Brusson
Browse files
Updates example images with new path
parent
a7e9cb31
Changes
3
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examples/from_intel18/jacobi.def
View file @
82d7eae0
...
...
@@ -13,8 +13,10 @@ cp jacobi.c timer.h $SINGULARITY_ROOTFS/sourcefiles
%environment
export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2018.1.163/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2018.1.163/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2018.1.163/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.7:/opt/intel/compilers_and_libraries_2018.1.163/linux/daal/lib/intel64_lin:$LD_LIBRARY_PATH
export PATH=/opt/intel/compilers_and_libraries_2018.1.163/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.1.163/linux/mpi/intel64/bin:/usr/local/bin:$PATH
export LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2018.5.274/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2018.5.274/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2018/iga/lib:/opt/intel/debugger_2018/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2018.5.274/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.5.274/linux/daal/../tbb/lib/intel64_lin/gcc4.4:$LD_LIBRARY_PATH
export PATH=/opt/intel/compilers_and_libraries_2018.5.274/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.5.274/linux/mpi/intel64/bin:/usr/local/bin:$PATH
export PATH=/usr/local/jacobi/bin:$PATH
%labels
AUTHOR brusson@unistra.fr
...
...
@@ -24,10 +26,11 @@ AUTHOR brusson@unistra.fr
echo "Jacobi test installation"
export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2018.
1.163
/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/tbb/lib/intel64/gcc4.7:/opt/intel/
compilers_and_libraries_2018.1.163
/linux/daal/lib/intel64_lin:$LD_LIBRARY_PATH
export PATH=/opt/intel/compilers_and_libraries_2018.
1.163
/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/intel64/bin:/usr/local/bin:$PATH
export LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2018.
5.274
/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/tbb/lib/intel64/gcc4.7:/opt/intel/
debugger_2018/iga/lib:/opt/intel/debugger_2018/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2018.5.274/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.5.274
/linux/daal/
../tbb/
lib/intel64_lin
/gcc4.4
:$LD_LIBRARY_PATH
export PATH=/opt/intel/compilers_and_libraries_2018.
5.274
/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/intel64/bin:/usr/local/bin:$PATH
cd /sourcefiles
icc jacobi.c -o jacobi -qopenmp -std=c99 -D_BSD_SOURCE
mv jacobi /usr/local/bin
mkdir -p /usr/local/jacobi/bin
mv jacobi /usr/local/jacobi/bin
examples/from_openmpi3-intel18/bandwidth.def
View file @
82d7eae0
...
...
@@ -13,10 +13,12 @@ cp bandwidth.c $SINGULARITY_ROOTFS/sourcefiles
%environment
export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/usr/local/openmpi/openmpi-3.1.3-i18/lib:/usr/local/openmpi/openmpi-3.1.3-i18/lib/openmpi:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/tbb/lib/intel64/gcc4.7:/opt/intel/
compilers_and_libraries_2018.1.163
/linux/daal/lib/intel64_lin:$LD_LIBRARY_PATH
export PATH=/usr/local/openmpi/openmpi-3.1.3-i18/bin:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/intel64/bin:/usr/local/bin:$PATH
export LD_LIBRARY_PATH=/usr/local/openmpi/openmpi-3.1.3-i18/lib:/usr/local/openmpi/openmpi-3.1.3-i18/lib/openmpi:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/tbb/lib/intel64/gcc4.7:/opt/intel/
debugger_2018/iga/lib:/opt/intel/debugger_2018/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2018.5.274/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.5.274
/linux/daal/
../tbb/
lib/intel64_lin
/gcc4.4
:$LD_LIBRARY_PATH
export PATH=/usr/local/openmpi/openmpi-3.1.3-i18/bin:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/intel64/bin:/usr/local/bin:$PATH
export LD_LIBRARY_PATH=/important_libs:$LD_LIBRARY_PATH
export PATH=/usr/local/bandwidth/bin:$PATH
%labels
AUTHOR brusson@unistra.fr
...
...
@@ -25,10 +27,11 @@ AUTHOR brusson@unistra.fr
echo "Bandwidth test installation"
export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/usr/local/openmpi/openmpi-3.1.3-i18/lib:/usr/local/openmpi/openmpi-3.1.3-i18/lib/openmpi:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/tbb/lib/intel64/gcc4.7:/opt/intel/
compilers_and_libraries_2018.1.163
/linux/daal/lib/intel64_lin:$LD_LIBRARY_PATH
export PATH=/usr/local/openmpi/openmpi-3.1.3-i18/bin:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.
1.163
/linux/mpi/intel64/bin:/usr/local/bin:$PATH
export LD_LIBRARY_PATH=/usr/local/openmpi/openmpi-3.1.3-i18/lib:/usr/local/openmpi/openmpi-3.1.3-i18/lib/openmpi:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/tbb/lib/intel64/gcc4.7:/opt/intel/
debugger_2018/iga/lib:/opt/intel/debugger_2018/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2018.5.274/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2018.5.274
/linux/daal/
../tbb/
lib/intel64_lin
/gcc4.4
:$LD_LIBRARY_PATH
export PATH=/usr/local/openmpi/openmpi-3.1.3-i18/bin:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.
5.274
/linux/mpi/intel64/bin:/usr/local/bin:$PATH
export LD_LIBRARY_PATH=/important_libs:$LD_LIBRARY_PATH
cd /sourcefiles
mpicc -o bandwidth bandwidth.c
mv bandwidth /usr/local/bin
mkdir -p /usr/local/bandwidth/bin
mv bandwidth /usr/local/bandwidth/bin
examples/from_openmpi3-intel18/run_test.sh
View file @
82d7eae0
...
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@@ -19,7 +19,7 @@ done
libopenmpi
=
"--bind /usr/local/openmpi/openmpi-3.1.3-i18:/usr/local/openmpi/openmpi-3.1.3-i18"
libintel
=
"--bind /opt/intel/compilers_and_libraries_2018.
1.163
:/opt/intel/compilers_and_libraries_2018.
1.163
"
libintel
=
"--bind /opt/intel/compilers_and_libraries_2018.
5.274
:/opt/intel/compilers_and_libraries_2018.
5.274
"
case
$com
in
run
)
mpirun
-np
2
--hostfile
$hostfile
singularity
$debug
run
$libpsm
$libopenmpi
$libintel
bandwidth.sif
;;
...
...
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